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3 months ago

FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation

Nikhil Kumar Tomar Debesh Jha Michael A. Riegler Håvard D. Johansen Dag Johansen Jens Rittscher Pål Halvorsen Sharib Ali

FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation

Abstract

The increase of available large clinical and experimental datasets has contributed to a substantial amount of important contributions in the area of biomedical image analysis. Image segmentation, which is crucial for any quantitative analysis, has especially attracted attention. Recent hardware advancement has led to the success of deep learning approaches. However, although deep learning models are being trained on large datasets, existing methods do not use the information from different learning epochs effectively. In this work, we leverage the information of each training epoch to prune the prediction maps of the subsequent epochs. We propose a novel architecture called feedback attention network (FANet) that unifies the previous epoch mask with the feature map of the current training epoch. The previous epoch mask is then used to provide a hard attention to the learned feature maps at different convolutional layers. The network also allows to rectify the predictions in an iterative fashion during the test time. We show that our proposed \textit{feedback attention} model provides a substantial improvement on most segmentation metrics tested on seven publicly available biomedical imaging datasets demonstrating the effectiveness of FANet. The source code is available at \url{https://github.com/nikhilroxtomar/FANet}.

Code Repositories

nikhilroxtomar/fanet
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
medical-image-segmentation-on-2018-dataFANet
Dice: 0.9176
Precision: 0.9194
Recall: 0.9222
mIoU: 0.8569
medical-image-segmentation-on-chase-db1FANet
DSC: 0.8108
medical-image-segmentation-on-cvc-clinicdbFANet
mean Dice: 0.9355
medical-image-segmentation-on-drive-1FANet
F1 score: 0.8183
Precision: 0.8189
Recall: 0.8215
Specificity: 0.9826
mIoU: 0.6927
medical-image-segmentation-on-emFANet
DSC: 0.9547
IoU: 0.9134
Precision: 0.9529
Recall: 0.9568
Specificity: 0.8096
medical-image-segmentation-on-isic-2018-1FANet
DSC: 87.31
medical-image-segmentation-on-kvasir-segFANet
Average MAE: 0.8153
mean Dice: 0.8803

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FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation | Papers | HyperAI