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5 months ago

3D Medical Point Transformer: Introducing Convolution to Attention Networks for Medical Point Cloud Analysis

Yu Jianhui ; Zhang Chaoyi ; Wang Heng ; Zhang Dingxin ; Song Yang ; Xiang Tiange ; Liu Dongnan ; Cai Weidong

3D Medical Point Transformer: Introducing Convolution to Attention
  Networks for Medical Point Cloud Analysis

Abstract

General point clouds have been increasingly investigated for different tasks,and recently Transformer-based networks are proposed for point cloud analysis.However, there are barely related works for medical point clouds, which areimportant for disease detection and treatment. In this work, we propose anattention-based model specifically for medical point clouds, namely 3D medicalpoint Transformer (3DMedPT), to examine the complex biological structures. Byaugmenting contextual information and summarizing local responses at query, ourattention module can capture both local context and global content featureinteractions. However, the insufficient training samples of medical data maylead to poor feature learning, so we apply position embeddings to learnaccurate local geometry and Multi-Graph Reasoning (MGR) to examine globalknowledge propagation over channel graphs to enrich feature representations.Experiments conducted on IntrA dataset proves the superiority of 3DMedPT, wherewe achieve the best classification and segmentation results. Furthermore, thepromising generalization ability of our method is validated on general 3D pointcloud benchmarks: ModelNet40 and ShapeNetPart. Code is released.

Code Repositories

crane-papercode/3dmedpt
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
3d-part-segmentation-on-intra3DMedPT
DSC (A): 89.71
DSC (V): 97.29
IoU (A): 82.39
IoU (V): 94.82
3d-point-cloud-classification-on-intra3DMedPT
F1 score (5-fold): 0.936
3d-point-cloud-classification-on-modelnet403DMedPT
Number of params: 1.54M
Overall Accuracy: 93.4

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3D Medical Point Transformer: Introducing Convolution to Attention Networks for Medical Point Cloud Analysis | Papers | HyperAI