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G-CASCADE: Efficient Cascaded Graph Convolutional Decoding for 2D Medical Image Segmentation
Md Mostafijur Rahman; Radu Marculescu

Abstract
In recent years, medical image segmentation has become an important application in the field of computer-aided diagnosis. In this paper, we are the first to propose a new graph convolution-based decoder namely, Cascaded Graph Convolutional Attention Decoder (G-CASCADE), for 2D medical image segmentation. G-CASCADE progressively refines multi-stage feature maps generated by hierarchical transformer encoders with an efficient graph convolution block. The encoder utilizes the self-attention mechanism to capture long-range dependencies, while the decoder refines the feature maps preserving long-range information due to the global receptive fields of the graph convolution block. Rigorous evaluations of our decoder with multiple transformer encoders on five medical image segmentation tasks (i.e., Abdomen organs, Cardiac organs, Polyp lesions, Skin lesions, and Retinal vessels) show that our model outperforms other state-of-the-art (SOTA) methods. We also demonstrate that our decoder achieves better DICE scores than the SOTA CASCADE decoder with 80.8% fewer parameters and 82.3% fewer FLOPs. Our decoder can easily be used with other hierarchical encoders for general-purpose semantic and medical image segmentation tasks.
Code Repositories
Benchmarks
| Benchmark | Methodology | Metrics |
|---|---|---|
| medical-image-segmentation-on-automatic | MERIT-GCASCADE | Avg DSC: 92.23 |
| medical-image-segmentation-on-automatic | PVT-GCASCADE | Avg DSC: 91.95 |
| medical-image-segmentation-on-chase-db1 | PVT-GCASCADE | DSC: 0.8251 |
| medical-image-segmentation-on-chase-db1 | MERIT-GCASCADE | DSC: 0.8267 |
| medical-image-segmentation-on-cvc-clinicdb | PVT-GCASCADE | mIoU: 0.9018 mean Dice: 0.9468 |
| medical-image-segmentation-on-cvc-colondb | PVT-GCASCADE | mIoU: 0.7460 mean Dice: 0.8261 |
| medical-image-segmentation-on-drive-1 | MERIT-GCASCADE | F1 score: 0.8290 Recall: 0.8281 Specificity: 0.9844 mIoU: 0.7081 |
| medical-image-segmentation-on-drive-1 | PVT-GCASCADE | F1 score: 0.8210 Recall: 0.83 Specificity: 0.9822 mIoU: 0.697 |
| medical-image-segmentation-on-isic-2018-1 | PVT-GCASCADE | DSC: 91.51 mIoU: 86.53 |
| medical-image-segmentation-on-kvasir-seg | PVT-GCASCADE | mIoU: 0.8790 mean Dice: 0.9274 |
| medical-image-segmentation-on-miccai-2015-1 | MERIT-GCASCADE | Avg DSC: 84.54 Avg HD: 10.38 |
| medical-image-segmentation-on-miccai-2015-1 | PVT-GCASCADE | Avg DSC: 83.28 Avg HD: 15.83 |
| retinal-vessel-segmentation-on-chase_db1 | MERIT-GCASCADE | F1 score: 0.8267 Sensitivity: 0.8493 mIOU: 0.7050 |
| retinal-vessel-segmentation-on-chase_db1 | PVT-GCASCADE | F1 score: 0.8251 Sensitivity: 0.8584 mIOU: 0.7024 |
| retinal-vessel-segmentation-on-drive | MERIT-GCASCADE | Accuracy: 0.9707 F1 score: 0.8290 Specificity: 0.9844 mIoU: 0.7081 sensitivity: 0.8281 |
| retinal-vessel-segmentation-on-drive | PVT-GCASCADE | Accuracy: 0.9689 F1 score: 0.8210 Specificity: 0.9822 mIoU: 0.6970 sensitivity: 0.83 |
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