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{S. V. N. Vishwanathan Pinar Yanardag}
Abstract
In this paper, we present Deep Graph Kernels (DGK), a unified framework to learn latent representations of sub-structures for graphs, inspired by latest advancements in language modeling and deep learning. Our framework leverages the dependency information between sub-structures by learning their latent representations. We demonstrate instances of our framework on three popular graph kernels, namely Graphlet kernels, Weisfeiler-Lehman subtree kernels, and Shortest-Path graph kernels. Our experiments on several benchmark datasets show that Deep Graph Kernels achieve significant improvements in classification accuracy over state-of-the-art graph kernels.
Benchmarks
| Benchmark | Methodology | Metrics |
|---|---|---|
| graph-classification-on-collab | DGK | Accuracy: 73.09% |
| graph-classification-on-dd | DGK | Accuracy: 73.50% |
| graph-classification-on-enzymes | DGK | Accuracy: 53.43% |
| graph-classification-on-imdb-b | DGK | Accuracy: 66.96% |
| graph-classification-on-imdb-m | DGK | Accuracy: 44.55% |
| graph-classification-on-mutag | DGK | Accuracy: 87.44% |
| graph-classification-on-proteins | DGK | Accuracy: 75.68% |
| graph-classification-on-re-m12k | DGK | Accuracy: 32.22% |
| graph-classification-on-re-m5k | DGK | Accuracy: 41.27% |
| malware-detection-on-android-malware-dataset | Deep WL kernel | Accuracy: 98.16 |
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