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3 months ago

Deep Graph Kernels

{S. V. N. Vishwanathan Pinar Yanardag}

Abstract

In this paper, we present Deep Graph Kernels (DGK), a unified framework to learn latent representations of sub-structures for graphs, inspired by latest advancements in language modeling and deep learning. Our framework leverages the dependency information between sub-structures by learning their latent representations. We demonstrate instances of our framework on three popular graph kernels, namely Graphlet kernels, Weisfeiler-Lehman subtree kernels, and Shortest-Path graph kernels. Our experiments on several benchmark datasets show that Deep Graph Kernels achieve significant improvements in classification accuracy over state-of-the-art graph kernels.

Benchmarks

BenchmarkMethodologyMetrics
graph-classification-on-collabDGK
Accuracy: 73.09%
graph-classification-on-ddDGK
Accuracy: 73.50%
graph-classification-on-enzymesDGK
Accuracy: 53.43%
graph-classification-on-imdb-bDGK
Accuracy: 66.96%
graph-classification-on-imdb-mDGK
Accuracy: 44.55%
graph-classification-on-mutagDGK
Accuracy: 87.44%
graph-classification-on-proteinsDGK
Accuracy: 75.68%
graph-classification-on-re-m12kDGK
Accuracy: 32.22%
graph-classification-on-re-m5kDGK
Accuracy: 41.27%
malware-detection-on-android-malware-datasetDeep WL kernel
Accuracy: 98.16

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Deep Graph Kernels | Papers | HyperAI