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4 months ago

CliCR: A Dataset of Clinical Case Reports for Machine Reading Comprehension

Simon Šuster; Walter Daelemans

CliCR: A Dataset of Clinical Case Reports for Machine Reading Comprehension

Abstract

We present a new dataset for machine comprehension in the medical domain. Our dataset uses clinical case reports with around 100,000 gap-filling queries about these cases. We apply several baselines and state-of-the-art neural readers to the dataset, and observe a considerable gap in performance (20% F1) between the best human and machine readers. We analyze the skills required for successful answering and show how reader performance varies depending on the applicable skills. We find that inferences using domain knowledge and object tracking are the most frequently required skills, and that recognizing omitted information and spatio-temporal reasoning are the most difficult for the machines.

Code Repositories

clips/clicr
Official
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
question-answering-on-clicrGated-Attention Reader
F1: 33.9
question-answering-on-clicrStanford Attentive Reader
F1: 27.2

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CliCR: A Dataset of Clinical Case Reports for Machine Reading Comprehension | Papers | HyperAI