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5 months ago

Rotation Equivariant CNNs for Digital Pathology

Bastiaan S. Veeling; Jasper Linmans; Jim Winkens; Taco Cohen; Max Welling

Rotation Equivariant CNNs for Digital Pathology

Abstract

We propose a new model for digital pathology segmentation, based on the observation that histopathology images are inherently symmetric under rotation and reflection. Utilizing recent findings on rotation equivariant CNNs, the proposed model leverages these symmetries in a principled manner. We present a visual analysis showing improved stability on predictions, and demonstrate that exploiting rotation equivariance significantly improves tumor detection performance on a challenging lymph node metastases dataset. We further present a novel derived dataset to enable principled comparison of machine learning models, in combination with an initial benchmark. Through this dataset, the task of histopathology diagnosis becomes accessible as a challenging benchmark for fundamental machine learning research.

Code Repositories

basveeling/pcam
Official
Mentioned in GitHub
basveeling/keras-gcnn
tf
Mentioned in GitHub
basveeling/keras_gcnn
Official
tf
Mentioned in GitHub
eb00/pcam_analysis
tf
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
breast-tumour-classification-on-pcamp4m-DenseNet (D4)
AUC: 0.963

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Rotation Equivariant CNNs for Digital Pathology | Papers | HyperAI