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3 months ago

End-to-End Variational Networks for Accelerated MRI Reconstruction

Anuroop Sriram Jure Zbontar Tullie Murrell Aaron Defazio C. Lawrence Zitnick Nafissa Yakubova Florian Knoll Patricia Johnson

End-to-End Variational Networks for Accelerated MRI Reconstruction

Abstract

The slow acquisition speed of magnetic resonance imaging (MRI) has led to the development of two complementary methods: acquiring multiple views of the anatomy simultaneously (parallel imaging) and acquiring fewer samples than necessary for traditional signal processing methods (compressed sensing). While the combination of these methods has the potential to allow much faster scan times, reconstruction from such undersampled multi-coil data has remained an open problem. In this paper, we present a new approach to this problem that extends previously proposed variational methods by learning fully end-to-end. Our method obtains new state-of-the-art results on the fastMRI dataset for both brain and knee MRIs.

Code Repositories

facebookresearch/fastMRI
Official
pytorch
Mentioned in GitHub
z-fabian/MRAugment
pytorch
Mentioned in GitHub
MathFLDS/MRAugment
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
mri-reconstruction-on-fastmri-brain-4xEnd-to-end variational network
PSNR: 41
SSIM: 0.959
mri-reconstruction-on-fastmri-brain-8xEnd-to-end variational network
PSNR: 38
SSIM: 0.943
mri-reconstruction-on-fastmri-knee-4xEnd-to-end variational network
PSNR: 40
SSIM: 0.930
mri-reconstruction-on-fastmri-knee-8xEnd-to-end variational network
PSNR: 37
SSIM: 0.890
mri-reconstruction-on-fastmri-knee-val-8xE2E-VarNet (train+val)
NMSE: 0.0087
PSNR: 37.30
Params (M): 30
SSIM: 0.8936

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End-to-End Variational Networks for Accelerated MRI Reconstruction | Papers | HyperAI