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Weihua Hu Matthias Fey Marinka Zitnik Yuxiao Dong Hongyu Ren Bowen Liu Michele Catasta Jure Leskovec

Abstract
We present the Open Graph Benchmark (OGB), a diverse set of challenging and realistic benchmark datasets to facilitate scalable, robust, and reproducible graph machine learning (ML) research. OGB datasets are large-scale, encompass multiple important graph ML tasks, and cover a diverse range of domains, ranging from social and information networks to biological networks, molecular graphs, source code ASTs, and knowledge graphs. For each dataset, we provide a unified evaluation protocol using meaningful application-specific data splits and evaluation metrics. In addition to building the datasets, we also perform extensive benchmark experiments for each dataset. Our experiments suggest that OGB datasets present significant challenges of scalability to large-scale graphs and out-of-distribution generalization under realistic data splits, indicating fruitful opportunities for future research. Finally, OGB provides an automated end-to-end graph ML pipeline that simplifies and standardizes the process of graph data loading, experimental setup, and model evaluation. OGB will be regularly updated and welcomes inputs from the community. OGB datasets as well as data loaders, evaluation scripts, baseline code, and leaderboards are publicly available at https://ogb.stanford.edu .
Code Repositories
Benchmarks
| Benchmark | Methodology | Metrics |
|---|---|---|
| link-property-prediction-on-ogbl-citation2 | Matrix Factorization | Ext. data: No Number of params: 281113505 Test MRR: 0.5186 ± 0.0443 Validation MRR: 0.5181 ± 0.0436 |
| link-property-prediction-on-ogbl-collab | Matrix Factorization | Ext. data: No Number of params: 60514049 Test Hits@50: 0.3886 ± 0.0029 Validation Hits@50: 0.4896 ± 0.0029 |
| link-property-prediction-on-ogbl-ddi | Matrix Factorization | Ext. data: No Number of params: 1224193 Test Hits@20: 0.1368 ± 0.0475 Validation Hits@20: 0.3370 ± 0.0264 |
| link-property-prediction-on-ogbl-ppa | Matrix Factorization | Ext. data: No Number of params: 147662849 Test Hits@100: 0.3229 ± 0.0094 Validation Hits@100: 0.3228 ± 0.0428 |
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