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TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation
Yundong Zhang Huiye Liu Qiang Hu

Abstract
Medical image segmentation - the prerequisite of numerous clinical needs - has been significantly prospered by recent advances in convolutional neural networks (CNNs). However, it exhibits general limitations on modeling explicit long-range relation, and existing cures, resorting to building deep encoders along with aggressive downsampling operations, leads to redundant deepened networks and loss of localized details. Hence, the segmentation task awaits a better solution to improve the efficiency of modeling global contexts while maintaining a strong grasp of low-level details. In this paper, we propose a novel parallel-in-branch architecture, TransFuse, to address this challenge. TransFuse combines Transformers and CNNs in a parallel style, where both global dependency and low-level spatial details can be efficiently captured in a much shallower manner. Besides, a novel fusion technique - BiFusion module is created to efficiently fuse the multi-level features from both branches. Extensive experiments demonstrate that TransFuse achieves the newest state-of-the-art results on both 2D and 3D medical image sets including polyp, skin lesion, hip, and prostate segmentation, with significant parameter decrease and inference speed improvement.
Code Repositories
Benchmarks
| Benchmark | Methodology | Metrics |
|---|---|---|
| medical-image-segmentation-on-cvc-clinicdb | TransFuse-L | mean Dice: 0.934 |
| medical-image-segmentation-on-cvc-clinicdb | TransFuse-S | mean Dice: 0.918 |
| medical-image-segmentation-on-cvc-colondb | TransFuse-L | mIoU: 0.676 mean Dice: 0.744 |
| medical-image-segmentation-on-cvc-colondb | TransFuse-S | mIoU: 0.696 mean Dice: 0.773 |
| medical-image-segmentation-on-etis | TransFuse-L | mIoU: 0.661 mean Dice: 0.737 |
| medical-image-segmentation-on-etis | TransFuse-S | mIoU: 0.659 mean Dice: 0.733 |
| medical-image-segmentation-on-kvasir-seg | TransFuse-L | mIoU: 0.868 mean Dice: 0.918 |
| medical-image-segmentation-on-kvasir-seg | TransFuse-S | mIoU: 0.868 mean Dice: 0.918 |
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