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3 months ago

CASS: Cross Architectural Self-Supervision for Medical Image Analysis

Pranav Singh Elena Sizikova Jacopo Cirrone

CASS: Cross Architectural Self-Supervision for Medical Image Analysis

Abstract

Recent advances in deep learning and computer vision have reduced many barriers to automated medical image analysis, allowing algorithms to process label-free images and improve performance. However, existing techniques have extreme computational requirements and drop a lot of performance with a reduction in batch size or training epochs. This paper presents Cross Architectural - Self Supervision (CASS), a novel self-supervised learning approach that leverages Transformer and CNN simultaneously. Compared to the existing state of the art self-supervised learning approaches, we empirically show that CASS-trained CNNs and Transformers across four diverse datasets gained an average of 3.8% with 1% labeled data, 5.9% with 10% labeled data, and 10.13% with 100% labeled data while taking 69% less time. We also show that CASS is much more robust to changes in batch size and training epochs. Notably, one of the test datasets comprised histopathology slides of an autoimmune disease, a condition with minimal data that has been underrepresented in medical imaging. The code is open source and is available on GitHub.

Code Repositories

pranavsinghps1/CASS
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
classification-on-autoimmune-datasetCASS
F1 score: 0.8894
classification-on-autoimmune-datasetDINO
F1 score: 0.8639
classification-on-brain-tumor-mri-datasetDINO
F1 score: 0.9909
classification-on-isic-2019CASS
Balanced Multi-Class Accuracy: 0.6519
partial-label-learning-on-autoimmune-datasetDINO
F1 score: 0.8445
partial-label-learning-on-autoimmune-datasetCASS
F1 score: 0.8717
partial-label-learning-on-isic-2019CASS
Balanced Multi-Class Accuracy: 0.7258

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CASS: Cross Architectural Self-Supervision for Medical Image Analysis | Papers | HyperAI