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3 months ago

EffiSegNet: Gastrointestinal Polyp Segmentation through a Pre-Trained EfficientNet-based Network with a Simplified Decoder

Ioannis A. Vezakis Konstantinos Georgas Dimitrios Fotiadis George K. Matsopoulos

EffiSegNet: Gastrointestinal Polyp Segmentation through a Pre-Trained EfficientNet-based Network with a Simplified Decoder

Abstract

This work introduces EffiSegNet, a novel segmentation framework leveraging transfer learning with a pre-trained Convolutional Neural Network (CNN) classifier as its backbone. Deviating from traditional architectures with a symmetric U-shape, EffiSegNet simplifies the decoder and utilizes full-scale feature fusion to minimize computational cost and the number of parameters. We evaluated our model on the gastrointestinal polyp segmentation task using the publicly available Kvasir-SEG dataset, achieving state-of-the-art results. Specifically, the EffiSegNet-B4 network variant achieved an F1 score of 0.9552, mean Dice (mDice) 0.9483, mean Intersection over Union (mIoU) 0.9056, Precision 0.9679, and Recall 0.9429 with a pre-trained backbone - to the best of our knowledge, the highest reported scores in the literature for this dataset. Additional training from scratch also demonstrated exceptional performance compared to previous work, achieving an F1 score of 0.9286, mDice 0.9207, mIoU 0.8668, Precision 0.9311 and Recall 0.9262. These results underscore the importance of a well-designed encoder in image segmentation networks and the effectiveness of transfer learning approaches.

Code Repositories

ivezakis/effisegnet
Official
pytorch
Mentioned in GitHub

Benchmarks

BenchmarkMethodologyMetrics
medical-image-segmentation-on-kvasir-segEffiSegNet-B4
F-measure: 0.9552
Precision: 0.9679
Recall: 0.9429
mIoU: 0.9056
mean Dice: 0.9483
medical-image-segmentation-on-kvasir-segEffiSegNet-B5
F-measure: 0.9513
Precision: 0.9713
Recall: 0.9321
mIoU: 0.9065
mean Dice: 0.9488

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EffiSegNet: Gastrointestinal Polyp Segmentation through a Pre-Trained EfficientNet-based Network with a Simplified Decoder | Papers | HyperAI