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EffiSegNet: Gastrointestinal Polyp Segmentation through a Pre-Trained EfficientNet-based Network with a Simplified Decoder
Ioannis A. Vezakis Konstantinos Georgas Dimitrios Fotiadis George K. Matsopoulos

Abstract
This work introduces EffiSegNet, a novel segmentation framework leveraging transfer learning with a pre-trained Convolutional Neural Network (CNN) classifier as its backbone. Deviating from traditional architectures with a symmetric U-shape, EffiSegNet simplifies the decoder and utilizes full-scale feature fusion to minimize computational cost and the number of parameters. We evaluated our model on the gastrointestinal polyp segmentation task using the publicly available Kvasir-SEG dataset, achieving state-of-the-art results. Specifically, the EffiSegNet-B4 network variant achieved an F1 score of 0.9552, mean Dice (mDice) 0.9483, mean Intersection over Union (mIoU) 0.9056, Precision 0.9679, and Recall 0.9429 with a pre-trained backbone - to the best of our knowledge, the highest reported scores in the literature for this dataset. Additional training from scratch also demonstrated exceptional performance compared to previous work, achieving an F1 score of 0.9286, mDice 0.9207, mIoU 0.8668, Precision 0.9311 and Recall 0.9262. These results underscore the importance of a well-designed encoder in image segmentation networks and the effectiveness of transfer learning approaches.
Code Repositories
Benchmarks
| Benchmark | Methodology | Metrics |
|---|---|---|
| medical-image-segmentation-on-kvasir-seg | EffiSegNet-B4 | F-measure: 0.9552 Precision: 0.9679 Recall: 0.9429 mIoU: 0.9056 mean Dice: 0.9483 |
| medical-image-segmentation-on-kvasir-seg | EffiSegNet-B5 | F-measure: 0.9513 Precision: 0.9713 Recall: 0.9321 mIoU: 0.9065 mean Dice: 0.9488 |
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