HyperAIHyperAI

Command Palette

Search for a command to run...

3 months ago

Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain

{M.Grossman J.C.Gee C.L.Epstein B.B.Avants}

Abstract

One of the most challenging problems in modern neuroimaging is detailed characterization of neurodegeneration. Quantifying spatial and longitudinal atrophy patterns is an important component of this process. These spatiotemporal signals will aid in discriminating between related diseases, such as frontotemporal dementia (FTD) and Alzheimer's disease (AD), which manifest themselves in the same at-risk population. Here, we develop a novel symmetric image normalization method (SyN) for maximizing the cross-correlation within the space of diffeomorphic maps and provide the Euler-Lagrange equations necessary for this optimization. We then turn to a careful evaluation of our method. Our evaluation uses gold standard, human cortical segmentation to contrast SyN's performance with a related elastic method and with the standard ITK implementation of Thirion's Demons algorithm. The new method compares favorably with both approaches, in particular when the distance between the template brain and the target brain is large. We then report the correlation of volumes gained by algorithmic cortical labelings of FTD and control subjects with those gained by the manual rater. This comparison shows that, of the three methods tested, SyN's volume measurements are the most strongly correlated with volume measurements gained by expert labeling. This study indicates that SyN, with cross-correlation, is a reliable method for normalizing and making anatomical measurements in volumetric MRI of patients and at-risk elderly individuals.

Benchmarks

BenchmarkMethodologyMetrics
birl-on-cima-10kANTs
AMrTRE: 2.3
MMrTRE: 1.67
diffeomorphic-medical-image-registration-onANTs (SyN)
CPU (sec): 9059
Dice (Average): 0.749
Dice (SE): 0.136
Neg Jacob Det: 7523
diffeomorphic-medical-image-registration-on-1SyN
Dice: 0.801
Grad Det-Jac: 3.4
Hausdorff Distance (mm): 8.1
RMSE: 0.32
diffeomorphic-medical-image-registration-on-2SyN
Mean target overlap ratio: 0.514

Build AI with AI

From idea to launch — accelerate your AI development with free AI co-coding, out-of-the-box environment and best price of GPUs.

AI Co-coding
Ready-to-use GPUs
Best Pricing
Get Started

Hyper Newsletters

Subscribe to our latest updates
We will deliver the latest updates of the week to your inbox at nine o'clock every Monday morning
Powered by MailChimp
Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain | Papers | HyperAI